PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00156.14
Common NameAMTR_s00156p00038330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family WRKY
Protein Properties Length: 427aa    MW: 47626.3 Da    PI: 4.8796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00156.14genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30231290159
                                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                              ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  evm_27.model.AmTr_v1.0_scaffold00156.14 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 290
                                              58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32216292IPR003657WRKY domain
SuperFamilySSF1182909.55E-28224292IPR003657WRKY domain
PROSITE profilePS5081128.782226292IPR003657WRKY domain
SMARTSM007743.2E-37231291IPR003657WRKY domain
PfamPF031063.1E-27232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAGPGNGRSS TSLSDRDDRV GEIDLSLKLE EEEEERHEVE DGERGEFDES ENGGEEDQKQ  60
SISQRKQLSV LQIEMVRMKE ENRVLRMAVD QTFKDYQELQ MKFASIQQNR REDMTPKEEK  120
AQIMLPINTS PGGIIDRKSS IKYINTIESS DLKGGEELSL SLGIPSSEKE TQKREENERD  180
KDEEIEENFQ MNGWLLPNKL QQREITELVA PPMAPRKSRV SVRARCQAPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS  300
TTAAAATFML LNSQAQPYPP QNNFLSQNPN SNRGAIPPSS SEGIVLDLTR PQPPHFDMGS  360
SPYLSSVHYQ GSMDQCLVDN VSAVASDPKF RVALAAALSS FMEQGSPVDR AGQPVFAEPT  420
RTQRLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23218294176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846618.20.0PREDICTED: probable WRKY transcription factor 9
TrEMBLW1PJV90.0W1PJV9_AMBTC; Uncharacterized protein
STRINGVIT_12s0055g00340.t012e-92(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-53WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]